Toots for victorjavierlo@genomic.social account

Written by victorjavierlo on 2025-01-24 at 08:12

Is the Jupyter notebook plug-in working in Spyder 6? @Spyder

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Written by victorjavierlo on 2025-01-14 at 17:54

When you talk about science, new possibilities arise. We have a new collaboration! #academicchatter

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Written by victorjavierlo on 2024-12-28 at 08:44

Have you noticed that OnlyOffice uses much more memory compared to LibreOffice Writer? #linux

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Written by victorjavierlo on 2024-12-04 at 21:00

Great news! 🎉 After some challenging times, especially after last year's contract disappointment, things are looking up! We secured two years of funding, thanks to the Comunidad de Madrid, for a research assistant to join us starting in January! #academicchatter

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Written by victorjavierlo on 2024-11-24 at 21:38

I would appreciate any advice on analyzing a protein structure using #AlphaFold, Colab, or #RFDiffusion models to identify new interactors. If anyone is interested, I would love to connect via Teams and collaborate. 🧬🖥️ #deeplearning

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Written by victorjavierlo on 2024-11-16 at 20:28

I love my new desktop!

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Written by victorjavierlo on 2024-11-15 at 21:39

We are super happy to see our manuscript finally on line in NAR Genomics and Bioinformatics!

Streamline your transcript quantification analysis with #Pyimportx! 🧬🖥️ Easily import and process RNA-seq data into Python with support for AnnData integration. Perfect for modern bioinformatics workflows. https://academic.oup.com/nargab/article/6/4/lqae160/7901285?login=false

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Written by victorjavierlo on 2024-11-09 at 21:29

Do you recommend any good resources or code examples on how to upload a package to conda-forge? #conda #bioinformatics

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Written by victorjavierlo on 2024-11-07 at 21:52

My apps: Onlyoffice, Zotero, Zulip, Libre Office Base, Tubba, Signal, Ulauncher. Love open source! #linux #opensource

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Written by victorjavierlo on 2024-11-06 at 21:41

I finally did it. My X account has been deleted! #mastodon #byeX

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Written by victorjavierlo on 2024-11-05 at 17:34

Experiencing issues with my external monitor on Fedora 41 with kernel 6.11.5-300.fc41.x86_64. Despite being detected correctly, I can’t set it to full resolution (1440p@144Hz) without display problems. Works fine on Fedora 40, so seems kernel-related. Using an MSI Modern Intel 7 with an Acer 24” monitor via USB-C & HDMI. Anyone else facing this or have solutions? 🤔 #Fedora #Linux #Kernel #TechHelp

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Written by victorjavierlo on 2024-11-02 at 20:20

It’s great when people actively maintain their GitHub repositories and respond to issues. This week, I received help from #PyWGCNA and #Decoupler. Thank you! #python #bioinformatics

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Written by victorjavierlo on 2024-10-30 at 16:45

And we’re already thinking about our next package for the Python bioinformatics community! Excited to keep developing tools that make data analysis easier and more efficient. Stay tuned for more updates! 🧬🐍 #Bioinformatics #Python #OpenSource

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Written by victorjavierlo on 2024-10-30 at 16:37

🎉 Thrilled to announce that our work on pyimportx has been accepted for publication in NAR Genomics and Bioinformatics!

This tool has been a labor of love, designed to streamline #bioinformatics workflows and provide the #python community with functionality similar to Tximport in R, along with additional features like seamless AnnData integration for scverse users. https://github.com/victorsanchezarevalo/pymportx/

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Written by victorjavierlo on 2024-10-26 at 21:54

Do you have any recommendations for a good #laptop for #bioinformatics

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Written by victorjavierlo on 2024-10-25 at 20:16

I’m running GNOME on Wayland (Fedora 40) with dual monitors. My laptop screen doesn’t display the bottom portion correctly (app bar is cut off), while my external monitor works perfectly.

•	I’ve tried adjusting resolution, scaling, refresh rate, and updating drivers.

•	Restarting GNOME Shell isn’t available on Wayland.

•	No issues with extensions either.

Has anyone experienced this? Any tips to fix it?

[#]GNOME #Wayland #Fedora #LinuxHelp

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Written by victorjavierlo on 2024-10-24 at 17:31

Making progress with Decoupler! Now getting results for several transcription factors after resolving gene match issues with CollectRI. #bioinformatics #python

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Written by victorjavierlo on 2024-10-22 at 14:47

Not a very productive day. I was doing some analysis with PyWGCNA and Decoupler, and in both cases, I had to submit an issue. #python #bioinformatics #datascience

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Written by victorjavierlo on 2024-10-20 at 19:10

I have to finish tomorrow my #PyWGCNA analysis! I need a couple of days without meetings… #bioinformatics #python

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Written by victorjavierlo on 2024-10-18 at 18:52

Have you used Decoupler? I am having some pronlems: https://decoupler-py.readthedocs.io/en/latest/ #python #bioinformatics

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