Ancestors

Toot

Written by victorjavierlo on 2024-10-30 at 16:37

🎉 Thrilled to announce that our work on pyimportx has been accepted for publication in NAR Genomics and Bioinformatics!

This tool has been a labor of love, designed to streamline #bioinformatics workflows and provide the #python community with functionality similar to Tximport in R, along with additional features like seamless AnnData integration for scverse users. https://github.com/victorsanchezarevalo/pymportx/

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Descendants

Written by Charles Tapley Hoyt on 2024-10-30 at 18:24

@victorjavierlo there are several things about this repo I would have flagged during peer review. I’m happy to give you and your group a tutorial on packaging and distribution of scientific python packages so your next one can be reused by others!

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Written by victorjavierlo on 2024-10-30 at 18:38

@cthoyt it would be great! Could you share the tutorial, please? Thanks for your feedback

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Written by Charles Tapley Hoyt on 2024-10-30 at 23:31

@victorjavierlo I actually meant a hands-on tutorial! a lot of things have changed since the last time I recorded it 3 years ago (https://www.youtube.com/watch?v=f6brWkO9OiE)

all of the ideas in this are reflected in my cookiecutter package https://github.com/cthoyt/cookiecutter-snekpack

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