Here are the changes in the index.html file I copied from the theme into my templates directory:
Before:
{% if config.generate_feed %}
<link rel="alternate" type="application/atom+xml" title="Feed" href="{{ get_url(path=config.feed_filename, trailing_slash=false) }}">
{% endif %}
After:
{% if config.generate_feeds %}
<link rel="alternate" type="application/atom+xml" title="Feed" href="{{ get_url(path='atom.xml') | safe }}"
/>
{% endif %}
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text/gemini
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