The errors show up as an error icon that can be clicked to expand to the error report shown in the screenshot, so they are not intrusive. Still, they cause these hiccups and temporary losses of functionality while CLion tries to get back on track.
This is an "early access" version and issues are to be expected, but the issues could get fixed a bit more rapidly. One would assume that the internals of Jetbrain's products should be really mature by now and not break this easily.
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